KG-1:Raji Cell Lines – 50:50 Mix


Sample dataset for a KG-1:Raji cell lines 50:50 mix experiment using the Tapestri Single-Cell DNA Myeloid panel (add link to MYE Panel in Designer)

  • A cell line mix consisting of 50% Raji cells and 50% KG-1 cells was run on the Tapestri Platform
  • 1/2 of the Tapestri run was sequenced on an Illumina NextSeq instrument
  • FASTQ files were processed with Tapestri Pipeline software using default values for parameters to generate variant calls
  • 72M reads were generated for 1,592 cells at ~39,000 reads per cell and 125x coverage of reads/amplicon/cell
  • Download includes VCF & LOOM files, which are viewable with Tapestri Insights software